The BEST Sourdough Lemon Poppy Seed Muffins – Sourdough Brandon


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These easy Sourdough Lemon Poppy Seed Muffins are tangy and zesty made with sourdough discard, lemon zest, lemon juice, creamy ricotta, crunchy poppy seeds, and topped with a lemon glaze.

The moist and tender sourdough lemon muffins are the perfect balance of sweet and tart with lots of lemon flavor. The addition of sourdough discard not only reduces waste but adds a subtle depth and tender crumb, while creamy ricotta (or yogurt or sour cream) keeps them rich and soft.

Be sure to follow my detailed instructions and tips below for making them so you get domed bakery-style muffin tops! These sourdough discard lemon muffins are a great way to start your weekend morning breakfast, brunch, or as an afternoon treat.

👉 For other favorite sourdough muffin recipes, check out:

Sourdough lemon poppy seed muffins on a plate with lemon glaze dripping and a bowl of lemons in the background.Sourdough lemon poppy seed muffins on a plate with lemon glaze dripping and a bowl of lemons in the background.

👍 Why You’ll Love This Recipe

  • Bright lemon flavor from lemon zest, lemon juice, and lemon glaze.
  • Ricotta keeps the muffins moist and rich.
  • Domed bakery-style tops.
  • Balance of tart and sweet.
  • Slight crunch from poppy seeds adds texture and nutty flavor.
  • No fancy equipment required.
Bite taken out of a sourdough lemon poppy seed muffin on a plate.Bite taken out of a sourdough lemon poppy seed muffin on a plate.

🔍 Tips for Making the Best Sourdough Lemon Poppy Seed Muffins

  • Rest the batter at least an hour and up to overnight in the refrigerator for bakery-style tops.
  • Bake at a high temperature (400ºF or 204ºC) so they rise tall.
  • For the best flavor, use seasonal citrus like Meyer Lemons.
  • Don’t overmix or they’ll be tough.
  • Line your muffin pan with muffin tins/paper and grease them with oil to prevent sticking.
Twelve sourdough lemon poppy seed muffins on a large platter with a sliced lemon, bowl of poppy seeds, and lemon bowl.Twelve sourdough lemon poppy seed muffins on a large platter with a sliced lemon, bowl of poppy seeds, and lemon bowl.

You only need a couple of mixing bowls and a few basic tools to make the sourdough discard lemon muffins.

  • Baking scale:
    • Flour and sourdough starter can weigh differently from person to person, so weighing your ingredients is the best option! Weighing your ingredients by weight will make your baking more consistent and accurate.
  • Muffin Pan
    • I love this USA Muffin Pan because it’s naturally non-stick and heavy-duty!
  • Spatula and Whisk
    • If you have an electric hand mixer or stand mixer, you can also use them to mix the muffin batter.

🛒 Ingredients Needed

See below for my ingredient recommendations and possible substitutions.

Labeled ingredients needed for sourdough lemon poppy seed muffins including all-purpose flour, lemons, poppy seeds, eggs, salt, baking powder, sourdough discard, melted butter, granulated sugar, light brown sugar, ricotta, and powdered sugar.Labeled ingredients needed for sourdough lemon poppy seed muffins including all-purpose flour, lemons, poppy seeds, eggs, salt, baking powder, sourdough discard, melted butter, granulated sugar, light brown sugar, ricotta, and powdered sugar.
  • All-purpose flour
    • You can substitute some or all of the all-purpose flour with whole wheat flour or a gluten-free flour.
  • Salt
  • Baking Powder: so the muffins stay soft and rise in the oven.
  • Lemons
    • If you can find Meyer Lemons, use them for the best flavor! They’re in season in the wintertime and have floral, orange notes that are less acidic than regular lemons.
    • A tip I have is to buy a bunch and preserve lemons for recipes like my Preserved Lemon & Rosemary Sourdough Bread.
    • Use the zest and juice from the lemons for lots of bright zesty flavor. If you want even more, add a 1/2 tsp of lemon extract.
  • Poppy Seeds
  • Unsalted butter, melted
    • I like using butter in most muffin recipes as the primary fat, but you can substitute with coconut oil or another neutral oil instead.
  • Ricotta
    • Use whole milk ricotta for the most moist muffins. This is a great way to use up extra ricotta after making lasagna or another recipe that doesn’t use a whole container!
    • Substitute with an equal amunt of Greek yogurt or sour cream.
  • Light brown sugar
    • Brown sugar has molasses, which adds a little more richness to the muffins.
  • Granulated sugar
    • Balanced out the tartness of the lemons and adds structure too the muffins.
  • Eggs:
    • Adds structure to help bind the ingredients together and helps the muffins rise tall.
  • Sourdough Discard
  • Powdered sugar, for lemon glaze
    • The simple lemon glaze is made of powdered sugar and lemon juice so it easily dissolves and is pourable.

Variations

  • Sourdough grapefruit muffins: use the same recipe but substitute the lemon juice and zest for grapefruit.
  • Sourdough orange muffins: substitute the lemon juice and zest with orange.
  • Add ½ tsp of vanilla extract or ¼ tsp of almond extract for a little more pop of flavor.
  • Skip the glaze and fill the muffins with a lemon curd.
  • For more tanginess, add a cream cheese filling like my sourdough pumpkin cream cheese muffins.

🍋 How to Make Sourdough Lemon Poppy Seed Muffins

Follow this detailed recipe guide as you make the best sourdough discard lemon muffins.

This recipe makes 12 muffins.

1. Mix the Dry Ingredients

Zest two lemons in a large mixing bowl with the granulated sugar and light brown sugar. Rub the zest into the sugar with your hands to release the essential oils and fragrance the sugar.

Then, whisk in the all-purpose flour, salt, baking powder, and poppy seeds.

Set aside.

2. Whisk the Wet Ingredients

In another medium bowl, whisk the two eggs, ricotta, lemon juice, and sourdough discard until incorporated.

Then, melt the butter in a small bowl in the microwave or on a stovetop and pour in last to the wet ingredients until creamy.

Wet ingredients whisked in bowl with whisk for sourdough lemon poppy seed muffins.Wet ingredients whisked in bowl with whisk for sourdough lemon poppy seed muffins.

3. Mix the Batter

Add the wet ingredients to the bowl of dry ingredients and fold with a spatula just until no flour specks remain.

Don’t overmix to avoid gluten development, which may make your muffins tougher.

4. Chill the Batter

For the best results, chill the batter for at least one hour and up to overnight.

Chilling the batter will help the flour and flavors hydrate, improve the flavor, and help the muffins rise tall in the oven.

5. Bake

Preheat the oven to 400ºF (204ºC).

Prepare a standard 12-cup muffin pan with paper liners and spray with non-stick oil or grease to prevent sticking.

Remove the cold batter from the refrigerator and equally divide the batter among the muffin cups. I like to use a large ice cream or cookie scoop for this, but you can also use a spoon or spatula.

Bake for 25 minutes or until a toothpick inserted into the middle comes out clean.

Finally, cool the lemon muffins on a wire rack before glazing.

6. Make the Lemon Glaze

In a small bowl, mix the powdered sugar and more fresh lemon juice together until you have a thick but pourable lemon glaze.

Finally, drizzle or spoon on top of the cooled sourdough lemon muffins and top with a sprinkle of poppy seeds.


How to Store and Serve

You can store these sourdough lemon poppy seed muffins at room temperature, in the refrigerator, or freeze them.

To keep them from drying out at room temperature, keep the muffins in an airtight container for 3-4 days or in the refrigerator a couple of more days.

Muffins dry out over time, so for longer term storage, you can wrap them in plastic wrap and freeze for up to three months. Thaw overnight and reheat in the oven or a toaster oven.

To serve, consider pairing them with a hot beverage like coffee or tea for breakfast, brunch, or as an afternoon treat. They’re a particularly great choice for Mother’s Day!

sourdough lemon poppy seed muffins on a plate with lemon glaze dripping, a sliced lemon in front, and a bowl of lemons in the back.sourdough lemon poppy seed muffins on a plate with lemon glaze dripping, a sliced lemon in front, and a bowl of lemons in the back.

❓ FAQs:

Can I double the recipe?

Yes. Simply double all of the ingredients, bake in two muffin pans, and make about 24 muffins.

Why are my sourdough lemon muffins dry?

If you overmixed the batter or if you overbaked the muffins, they may turn out more cakey or tough. Muffins are often made with oil, but I prefer to use butter for richness and flavor. However, you could add ¼ cup of oil to help keep them more moist too.

Can I long ferment the muffin batter overnight?

Yes, you can mix the sourdough muffin batter and store it in the refrigerator overnight.

Can I use yogurt instead of ricotta?

Feel free to substitute the ricotta with whole milk yogurt, Greek yogurt, or sour cream.

How do I get bakery-style domed tops on my muffins?

Let the batter rest for at least an hour in the refrigerator and up to overnight and bake the muffins at a high temperature so they rise tall.

Can I use bottled lemon juice?

For the best flavor, I always recommend using fresh lemon juice when possible. Plus, you’re using the zest from lemons in the recipe for more lemon flavor. Bottled juice often adds preservatives and is usually too sour with citric acid.

Bite taken out of a sourdough lemon poppy seed muffin on a plate.Bite taken out of a sourdough lemon poppy seed muffin on a plate.

Other Sourdough Breakfast Recipes You May Enjoy:

Flaky sourdough biscuits on a platter.Flaky sourdough biscuits on a platter.

Flaky Sourdough Biscuits

Make the flakiest Sourdough Biscuits with this easy Southern-style recipe using sourdough discard and buttermilk….


⭐️ Did You Make This Recipe? ⭐️

Leave a star review and/or comment below!

Tag me on Instagram or Facebook @SourdoughBrandon or PIN this recipe on Pinterest to come back to it later!

Sourdough Lemon Poppy Seed Muffins

Popping with tangy lemon flavor, these Sourdough Lemon Poppy Seed Muffins are made with sourdough discard, easy to make, and filled with crunchy poppy seeds.

Prep Time10 minutes

Cook Time25 minutes

Resting Time1 hour

Total Time1 hour 35 minutes

Yield or Serving: 12 Muffins

  • 2 TBS Lemon Zest, from two lemons
  • 165 g Granulated Sugar, ¾ cup
  • 50 g Light Brown Sugar, ¼ cup /adjustable]
  • 210 g All-purpose flour, 1 ¾ cups
  • ½ tsp Kosher Salt
  • 2 tsp Baking powder
  • 2 TBS Poppy Seeds
  • 2 Eggs, room temperature
  • 120 g Ricotta, whole milk yogurt or sour cream at room temperature, ½ cup
  • 2 TBS Lemon Juice, fresh from one lemon
  • 120 g Sourdough Discard, or active starter, ½ cup
  • 113 g Unsalted Butter, melted, 1 stick or 8 TBS

Prevent your screen from going dark

  • In a medium mixing bowl, rub the lemon zest into the sugars with your fingers to release the essential oils and becomes fragrant.Add the dry ingredients, whisk, and set aside.

    2 TBS Lemon Zest, 50 g Light Brown Sugar, 210 g All-purpose flour, ½ tsp Kosher Salt, 2 tsp Baking powder, 2 TBS Poppy Seeds

  • Melt the stick of butter in the microwave or on the stovetop.In a large mixing bowl, whisk the eggs, ricotta, lemon juice, and sourdough discard together until incorporated.Whisk the melted butter in last until you have a creamy mixture.

    165 g Granulated Sugar, 2 Eggs, 120 g Ricotta, 120 g Sourdough Discard, 113 g Unsalted Butter, 2 TBS Lemon Juice

  • Add the wet ingredients to the bowl of dry ingredients and fold with a spatula just until the flour is hydrated.

  • Cover and chill the muffin batter in the refrigerator for at least an hour and up to overnight.

  • Preheat the oven to 400ºF (204ºC). Prepare a muffin pan with liners and spray with oil or grease.Equally divide the batter among muffin cups.Bake for about 23-25 minutes or until a toothpick inserted into the middle comes out clean. Let cool on a wire rack completely before adding lemon glaze.
  • Make the Lemon Glaze:Stir the powdered sugar and fresh lemon juice together until you have a thick, but pourable glaze. Add more juice if it’s too thick and more powdered sugar if too thin.Drizzle or spoon on top of the cooled lemon muffins and top with a sprinkle of poppy seeds. Enjoy!

    100 g Powdered Sugar, 2 TBS Lemon Juice, Poppy Seeds

  • Follow my guide above for more detailed instructions, tips, and photos to make these easy sourdough discard chocolate muffins.
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